RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55480.1 View Network Show in Genome Browser |
| Other Names | Os04g0648500 |
| Description | BRCA1-associated protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32994299-32999782 Nucleotide Length: 1674 |
| Protein-coding | LOC_Os04g55480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g52510 LOC_Os03g16130 LOC_Os01g44130 LOC_Os04g41470 LOC_Os01g08200 LOC_Os03g16030 LOC_Os03g16020 LOC_Os03g19059 LOC_Os03g05570 LOC_Os02g47870 LOC_Os02g31150 More.. |
| Downstream Genes | LOC_Os09g32740 LOC_Os09g24250 LOC_Os05g31770 LOC_Os06g19680 LOC_Os07g22840 LOC_Os12g01190 LOC_Os08g42740 LOC_Os09g33876 LOC_Os06g25439 LOC_Os05g43610 LOC_Os07g41800 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55480.1 |
| Rice Genome Annotation | LOC_Os04g55480.1 |
| Ricechip | LOC_Os04g55480.1 |
| KEGG | osa:4337211 dosa:Os04t0648500-01 |
| Entrez-Gene | 4337211 |