RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55720.1 View Network Show in Genome Browser |
| Other Names | Os04g0650800 |
| Description | D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33167054-33169943 Nucleotide Length: 1842 |
| Protein-coding | LOC_Os04g55720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g07490 LOC_Os02g39570 LOC_Os02g34990 LOC_Os03g58810 LOC_Os03g06200 LOC_Os02g30310 LOC_Os01g74650 LOC_Os03g63330 LOC_Os04g46560 LOC_Os01g70300 LOC_Os03g18130 More.. |
| Downstream Genes | LOC_Os08g34720 LOC_Os06g15420 LOC_Os06g44460 LOC_Os11g41160 LOC_Os09g37230 LOC_Os11g14950 LOC_Os12g31820 LOC_Os07g20544 LOC_Os07g49390 LOC_Os06g45590 LOC_Os07g08430 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn00680 rn01100 rn01120 |
| Metacyc Pathways | SERSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55720.1 |
| Rice Genome Annotation | LOC_Os04g55720.1 |
| Ricechip | LOC_Os04g55720.1 |
| KEGG | osa:4337230 dosa:Os04t0650800-01 |
| Entrez-Gene | 4337230 |