RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55780.1 View Network Show in Genome Browser |
| Other Names | Os04g0652200,Os04g0652101 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33206415-33207663 Nucleotide Length: 936 |
| Protein-coding | LOC_Os04g55780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g06200 LOC_Os02g02390 LOC_Os02g47940 LOC_Os01g40640 LOC_Os01g66180 |
| Downstream Genes | LOC_Os06g35050 LOC_Os06g04280 LOC_Os06g49520 LOC_Os05g48750 LOC_Os05g45920 LOC_Os05g34770 |
| Pathways | |
|---|---|
| KEGG Pathways | rn01110 rn01100 rn00400 |
| Metacyc Pathways | PHESYN PWY-3462 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55780.1 |
| Rice Genome Annotation | LOC_Os04g55780.1 |
| Ricechip | LOC_Os04g55780.1 |