RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55940.1 View Network Show in Genome Browser |
| Other Names | Os04g0653200 |
| Description | sodium/calcium exchanger protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33314630-33319375 Nucleotide Length: 1254 |
| Protein-coding | LOC_Os04g55940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g51610 LOC_Os02g08010 LOC_Os03g17310 LOC_Os01g59440 LOC_Os03g53750 LOC_Os03g45370 LOC_Os01g17020 LOC_Os03g08230 LOC_Os03g21620 LOC_Os03g10640 LOC_Os02g05630 More.. |
| Downstream Genes | LOC_Os10g30070 LOC_Os06g41440 LOC_Os11g01580 LOC_Os12g42910 LOC_Os10g28240 LOC_Os07g48290 LOC_Os12g04220 LOC_Os11g04460 LOC_Os09g39220 LOC_Os12g39660 LOC_Os08g40530 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55940.1 |
| Rice Genome Annotation | LOC_Os04g55940.1 |
| Ricechip | LOC_Os04g55940.1 |
| KEGG | osa:4337242 dosa:Os04t0653200-01 |
| Entrez-Gene | 4337242 |