RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56070.1 View Network Show in Genome Browser |
| Other Names | Os04g0654700 |
| Description | COP9 signalosome complex subunit 5b, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33394485-33397972 Nucleotide Length: 1083 |
| Protein-coding | LOC_Os04g56070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g63430 LOC_Os03g10120 LOC_Os01g34614 LOC_Os01g31470 LOC_Os01g13730 LOC_Os01g27160 LOC_Os03g10850 LOC_Os02g57590 LOC_Os04g30780 LOC_Os03g02540 LOC_Os03g58630 More.. |
| Downstream Genes | LOC_Os09g21760 LOC_Os06g48600 LOC_Os08g39070 LOC_Os05g07050 LOC_Os05g01450 LOC_Os11g26910 LOC_Os04g56646 LOC_Os10g30070 LOC_Os07g09310 LOC_Os08g39820 LOC_Os12g01680 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56070.1 |
| Rice Genome Annotation | LOC_Os04g56070.1 |
| Ricechip | LOC_Os04g56070.1 |
| KEGG | osa:4337249 dosa:Os04t0654700-01 |
| Entrez-Gene | 4337249 |