RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56210.1 View Network Show in Genome Browser |
| Other Names | Os04g0657100 |
| Description | polyprenyl synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33517156-33520052 Nucleotide Length: 1179 |
| Protein-coding | LOC_Os04g56210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g25540 LOC_Os02g15900 LOC_Os01g69950 LOC_Os04g34130 LOC_Os03g58540 LOC_Os01g55890 LOC_Os02g53720 LOC_Os03g39150 LOC_Os02g07790 LOC_Os03g14840 LOC_Os01g36790 More.. |
| Downstream Genes | LOC_Os08g31228 LOC_Os08g31219 LOC_Os05g48410 LOC_Os05g50550 LOC_Os06g46450 LOC_Os11g47800 LOC_Os12g17320 LOC_Os08g09370 LOC_Os08g06230 LOC_Os07g47300 LOC_Os08g12750 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | PWY-5123 POLYISOPRENSYN-PWY PWY-5121 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56210.1 |
| Rice Genome Annotation | LOC_Os04g56210.1 |
| Ricechip | LOC_Os04g56210.1 |
| KEGG | osa:4337260 dosa:Os04t0657100-01 |
| Entrez-Gene | 4337260 |