RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56290.1 View Network Show in Genome Browser |
| Other Names | Os04g0658000 |
| Description | aldose 1-epimerase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33557307-33563979 Nucleotide Length: 1035 |
| Protein-coding | LOC_Os04g56290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0030246 | carbohydrate binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g38530 LOC_Os03g26430 LOC_Os03g06230 LOC_Os01g13150 LOC_Os02g36600 LOC_Os04g38540 LOC_Os02g08030 LOC_Os02g07490 LOC_Os04g40950 LOC_Os02g38920 LOC_Os02g47850 More.. |
| Downstream Genes | LOC_Os09g17630 LOC_Os10g06720 LOC_Os05g51670 LOC_Os11g32260 LOC_Os06g13650 LOC_Os08g28730 LOC_Os09g15420 LOC_Os05g49430 LOC_Os06g07960 LOC_Os06g07860 LOC_Os08g03290 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00030 rn01100 rn01110 rn01120 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56290.1 |
| Rice Genome Annotation | LOC_Os04g56290.1 |
| Ricechip | LOC_Os04g56290.1 |
| KEGG | osa:4337265 dosa:Os04t0658000-02 |
| Entrez-Gene | 4337265 |