RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56400.1 View Network Show in Genome Browser |
| Other Names | Os04g0659100 |
| Description | glutamine synthetase, catalytic domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33624332-33631095 Nucleotide Length: 1287 |
| Protein-coding | LOC_Os04g56400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48960 LOC_Os01g37760 LOC_Os04g48410 LOC_Os04g38600 LOC_Os02g38210 LOC_Os03g52840 LOC_Os03g45170 LOC_Os02g32030 LOC_Os03g56670 LOC_Os03g55720 LOC_Os01g27630 More.. |
| Downstream Genes | LOC_Os10g31820 LOC_Os07g28610 LOC_Os07g37030 LOC_Os07g32880 LOC_Os05g04220 LOC_Os11g26850 LOC_Os08g02630 LOC_Os10g30090 LOC_Os05g48630 LOC_Os07g04840 LOC_Os10g39410 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00250 rn00330 rn00630 rn00910 rn01100 rn01120 |
| Metacyc Pathways | PWY-381 GLNSYN-PWY PWY-3282 PWY-6549 PWY-5675 PWY490-3 |
| Reference | |
|---|---|
| PubMed | 15574840 2577497 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56400.1 |
| Rice Genome Annotation | LOC_Os04g56400.1 |
| Ricechip | LOC_Os04g56400.1 |
| KEGG | osa:4337272 dosa:Os04t0659100-01 |
| Entrez-Gene | 4337272 |