RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56700.1 View Network Show in Genome Browser |
| Other Names | Os04g0662600 |
| Description | naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33809347-33812300 Nucleotide Length: 1134 |
| Protein-coding | LOC_Os04g56700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08020 LOC_Os01g37470 |
| Downstream Genes | LOC_Os11g32650 LOC_Os09g15340 LOC_Os06g09240 LOC_Os09g07450 |
| Pathways | |
|---|---|
| KEGG Pathways | rn01110 rn00941 rn01100 |
| Metacyc Pathways | PWY1F-FLAVSYN PWY-5152 PWY1F-823 PWY-5059 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56700.1 |
| Rice Genome Annotation | LOC_Os04g56700.1 |
| Ricechip | LOC_Os04g56700.1 |
| KEGG | osa:9270463 dosa:Os04t0662600-00 |
| Entrez-Gene | 9270463 |