RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56710.1 View Network Show in Genome Browser |
| Other Names | Os04g0662700 |
| Description | GTP cyclohydrolase I 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33814156-33818741 Nucleotide Length: 1245 |
| Protein-coding | LOC_Os04g56710 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g40570 LOC_Os01g51770 LOC_Os03g16920 LOC_Os03g04460 LOC_Os03g10510 LOC_Os01g46380 LOC_Os01g62290 LOC_Os03g60620 LOC_Os01g48680 LOC_Os02g52940 LOC_Os03g16860 More.. |
| Downstream Genes | LOC_Os09g19734 LOC_Os09g38759 LOC_Os08g44210 LOC_Os05g45950 LOC_Os10g17280 LOC_Os06g06100 LOC_Os08g36150 LOC_Os05g48810 LOC_Os06g27890 LOC_Os07g07550 LOC_Os05g49800 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2871a-3p osa-miR2871b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00790 rn01100 |
| Metacyc Pathways | FOLSYN-PWY PWY-3742 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56710.1 |
| Rice Genome Annotation | LOC_Os04g56710.1 |
| Ricechip | LOC_Os04g56710.1 |
| KEGG | osa:4337297 dosa:Os04t0662700-02 |
| Entrez-Gene | 4337297 |