RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56740.1 View Network Show in Genome Browser |
| Other Names | Os04g0663100 |
| Description | IQ calmodulin-binding motif family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33840009-33845937 Nucleotide Length: 2682 |
| Protein-coding | LOC_Os04g56740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g62580 LOC_Os04g31900 LOC_Os03g48140 LOC_Os03g21620 LOC_Os01g05420 LOC_Os03g62250 LOC_Os03g31490 LOC_Os02g02980 LOC_Os01g09620 LOC_Os03g08220 LOC_Os02g10120 More.. |
| Downstream Genes | LOC_Os07g30774 LOC_Os06g29350 LOC_Os08g13320 LOC_Os07g48290 LOC_Os06g14530 LOC_Os07g41590 LOC_Os04g58640 LOC_Os05g23880 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396a-5p osa-miR396b-5p osa-miR396c-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56740.1 |
| Rice Genome Annotation | LOC_Os04g56740.1 |
| Ricechip | LOC_Os04g56740.1 |
| KEGG | osa:4337301 dosa:Os04t0663100-01 |
| Entrez-Gene | 4337301 |