RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56970.1 View Network Show in Genome Browser |
| Other Names | Os04g0665400 |
| Description | tubulin/FtsZ domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33963664-33966745 Nucleotide Length: 1215 |
| Protein-coding | LOC_Os04g56970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g33230 LOC_Os01g11260 LOC_Os02g04500 LOC_Os03g12320 LOC_Os03g01530 LOC_Os01g59150 LOC_Os03g44420 LOC_Os02g55910 LOC_Os02g03000 LOC_Os01g54390 LOC_Os01g59920 More.. |
| Downstream Genes | LOC_Os10g40130 LOC_Os09g25580 LOC_Os11g14220 LOC_Os07g38730 LOC_Os05g06450 LOC_Os07g46640 LOC_Os06g07080 LOC_Os12g12850 LOC_Os11g16770 LOC_Os06g43760 LOC_Os11g16590 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56970.1 |
| Rice Genome Annotation | LOC_Os04g56970.1 |
| Ricechip | LOC_Os04g56970.1 |
| KEGG | osa:4337316 dosa:Os04t0665400-01 |
| Entrez-Gene | 4337316 |