RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g57220.4 View Network Show in Genome Browser |
| Other Names | Os04g0667800 |
| Description | ubiquitin-conjugating enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34087746-34090681 Nucleotide Length: 324 |
| Protein-coding | LOC_Os04g57220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70140 LOC_Os03g13170 LOC_Os02g06640 LOC_Os01g01700 LOC_Os03g57790 LOC_Os03g03130 LOC_Os01g60410 LOC_Os01g60360 LOC_Os01g56070 LOC_Os01g62244 LOC_Os04g53620 More.. |
| Downstream Genes | LOC_Os05g03100 LOC_Os09g39500 LOC_Os06g46770 LOC_Os05g42424 LOC_Os10g39120 LOC_Os07g07240 LOC_Os05g08960 LOC_Os05g06770 LOC_Os08g28680 LOC_Os09g15320 LOC_Os10g11260 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g57220.4 |
| Rice Genome Annotation | LOC_Os04g57220.4 |
| Ricechip | LOC_Os04g57220.4 |
| KEGG | osa:4337331 dosa:Os04t0667800-01 |
| Entrez-Gene | 4337331 |