RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g57350.1 View Network Show in Genome Browser |
| Other Names | Os04g0669300 |
| Description | EH domain-containing protein 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34138226-34142151 Nucleotide Length: 1629 |
| Protein-coding | LOC_Os04g57350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g56900 LOC_Os03g60180 LOC_Os01g27730 LOC_Os04g36030 LOC_Os02g01440 LOC_Os03g44530 LOC_Os03g13860 LOC_Os01g69130 LOC_Os03g19870 LOC_Os01g25880 LOC_Os04g31190 More.. |
| Downstream Genes | LOC_Os11g38020 LOC_Os07g04910 LOC_Os12g42370 LOC_Os11g26030 LOC_Os08g31460 LOC_Os08g10649 LOC_Os10g04580 LOC_Os11g47800 LOC_Os05g47550 LOC_Os10g42170 LOC_Os05g45050 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g57350.1 |
| Rice Genome Annotation | LOC_Os04g57350.1 |
| Ricechip | LOC_Os04g57350.1 |
| KEGG | osa:4337342 dosa:Os04t0669300-01 |
| Entrez-Gene | 4337342 |