RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g57490.1 View Network Show in Genome Browser |
| Other Names | Os04g0670500 |
| Description | cysteine protease, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34205994-34207906 Nucleotide Length: 1473 |
| Protein-coding | LOC_Os04g57490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18454 LOC_Os03g08600 LOC_Os02g41520 LOC_Os02g42660 LOC_Os02g07490 LOC_Os03g17700 LOC_Os03g08830 LOC_Os04g51910 LOC_Os03g50300 LOC_Os03g18380 LOC_Os01g44950 More.. |
| Downstream Genes | LOC_Os05g24550 LOC_Os06g07960 LOC_Os06g07860 LOC_Os08g12820 LOC_Os07g49520 LOC_Os06g06090 LOC_Os05g49150 LOC_Os06g45590 LOC_Os11g13540 LOC_Os09g26880 LOC_Os07g49230 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00564 rn00592 rn01100 |
| Metacyc Pathways | LIPASYN-PWY PWY-735 |
| Reference | |
|---|---|
| PubMed | 15356393 22970232 21467577 17138695 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g57490.1 |
| Rice Genome Annotation | LOC_Os04g57490.1 |
| Ricechip | LOC_Os04g57490.1 |
| KEGG | osa:4337353 dosa:Os04t0670500-01 |
| Entrez-Gene | 4337353 |