RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g57540.1 View Network Show in Genome Browser |
| Other Names | Os04g0671100 |
| Description | adenylate kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34236403-34238878 Nucleotide Length: 858 |
| Protein-coding | LOC_Os04g57540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07340 LOC_Os03g61260 LOC_Os03g12020 LOC_Os03g49710 LOC_Os03g03360 LOC_Os03g59310 LOC_Os03g54040 LOC_Os03g24020 LOC_Os02g27760 LOC_Os01g42640 LOC_Os03g26860 More.. |
| Downstream Genes | LOC_Os08g15460 LOC_Os06g39700 LOC_Os08g21840 LOC_Os05g33020 LOC_Os09g07910 LOC_Os07g10660 LOC_Os07g10720 LOC_Os05g38580 LOC_Os11g37510 LOC_Os10g32920 LOC_Os09g17840 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn01110 |
| Metacyc Pathways | DENOVOPURINE2-PWY P1-PWY PWY-6126 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g57540.1 |
| Rice Genome Annotation | LOC_Os04g57540.1 |
| Ricechip | LOC_Os04g57540.1 |
| KEGG | osa:4337358 dosa:Os04t0671100-01 |
| Entrez-Gene | 4337358 |