RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g57560.1 View Network Show in Genome Browser |
| Other Names | Os04g0671300 |
| Description | amine oxidase, flavin-containing, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34244247-34248323 Nucleotide Length: 1479 |
| Protein-coding | LOC_Os04g57560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g18320 LOC_Os03g08410 LOC_Os03g58920 LOC_Os02g13870 LOC_Os01g55110 |
| Downstream Genes | LOC_Os07g10490 LOC_Os12g16650 LOC_Os04g58090 LOC_Os09g37080 LOC_Os07g09690 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN HEMEBIOSYNTHESISII |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g57560.1 |
| Rice Genome Annotation | LOC_Os04g57560.1 |
| Ricechip | LOC_Os04g57560.1 |
| KEGG | osa:4337360 dosa:Os04t0671300-01 |
| Entrez-Gene | 4337360 |