RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g57610.3 View Network Show in Genome Browser |
| Other Names | Os04g0671900 |
| Description | auxin response factor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34278412-34285869 Nucleotide Length: 2457 |
| Protein-coding | LOC_Os04g57610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g52810 LOC_Os01g70560 LOC_Os01g61550 LOC_Os01g61510 LOC_Os01g52810 |
| Downstream Genes | LOC_Os08g31460 LOC_Os05g39240 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR167a-5p osa-miR167b osa-miR167c-5p osa-miR5487 |
| Reference | |
|---|---|
| PubMed | 16598073 21973088 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g57610.3 |
| Rice Genome Annotation | LOC_Os04g57610.3 |
| Ricechip | LOC_Os04g57610.3 |
| KEGG | osa:4337363 dosa:Os04t0671900-01 |
| Entrez-Gene | 4337363 |