RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g57800.2 View Network Show in Genome Browser |
| Other Names | Os04g0674300 |
| Description | BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34418639-34420866 Nucleotide Length: 1344 |
| Protein-coding | LOC_Os04g57800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0004871 | signal transducer activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g50810 LOC_Os02g15690 LOC_Os04g38570 LOC_Os01g42520 LOC_Os01g63770 LOC_Os03g02240 LOC_Os02g53200 LOC_Os02g44630 LOC_Os03g13570 LOC_Os03g62780 LOC_Os03g55930 More.. |
| Downstream Genes | LOC_Os08g39550 LOC_Os06g05550 LOC_Os11g44810 LOC_Os05g20930 LOC_Os09g36520 LOC_Os10g25780 LOC_Os04g58840 LOC_Os11g30430 LOC_Os08g39490 LOC_Os08g35090 LOC_Os10g41310 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g57800.2 |
| Rice Genome Annotation | LOC_Os04g57800.2 |
| Ricechip | LOC_Os04g57800.2 |
| KEGG | osa:4337379 dosa:Os04t0674300-01 |
| Entrez-Gene | 4337379 |