RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58060.1 View Network Show in Genome Browser |
| Other Names | Os04g0677066 |
| Description | methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34581071-34585886 Nucleotide Length: 1176 |
| Protein-coding | LOC_Os04g58060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g31000 LOC_Os02g56020 LOC_Os02g51030 LOC_Os01g03090 LOC_Os03g56830 LOC_Os02g38060 LOC_Os01g49250 LOC_Os03g51984 |
| Downstream Genes | LOC_Os12g10200 LOC_Os11g35340 LOC_Os08g42760 LOC_Os07g20150 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00380 rn00624 rn01120 rn00340 rn00350 rn00130 rn01100 rn01110 |
| Metacyc Pathways | PWY-4021 |
| Reference | |
|---|---|
| PubMed | 21853042 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58060.1 |
| Rice Genome Annotation | LOC_Os04g58060.1 |
| Ricechip | LOC_Os04g58060.1 |
| KEGG | osa:9268644 dosa:Os04t0677066-00 |
| Entrez-Gene | 9268644 |