RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58140.2 View Network Show in Genome Browser |
| Other Names | Os04g0677800 |
| Description | elongation factor Tu, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34626345-34631340 Nucleotide Length: 1683 |
| Protein-coding | LOC_Os04g58140 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g10500 LOC_Os03g14530 LOC_Os04g02820 LOC_Os02g32030 LOC_Os01g53900 LOC_Os01g52470 LOC_Os02g52730 LOC_Os01g25484 LOC_Os03g44780 LOC_Os01g53250 LOC_Os04g55960 More.. |
| Downstream Genes | LOC_Os07g32570 LOC_Os06g04290 LOC_Os11g41650 LOC_Os07g38560 LOC_Os10g08930 LOC_Os06g40600 LOC_Os05g51500 LOC_Os12g41400 LOC_Os12g07740 LOC_Os05g42350 LOC_Os08g15040 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58140.2 |
| Rice Genome Annotation | LOC_Os04g58140.2 |
| Ricechip | LOC_Os04g58140.2 |
| KEGG | osa:4337409 dosa:Os04t0677800-02 |
| Entrez-Gene | 4337409 |