RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58200.1 View Network Show in Genome Browser |
| Other Names | Os04g0678700 |
| Description | protochlorophyllide reductase A, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34663055-34664723 Nucleotide Length: 1164 |
| Protein-coding | LOC_Os04g58200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g38410 LOC_Os03g22370 |
| Downstream Genes | LOC_Os05g33280 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | ENTBACSYN-PWY |
| Reference | |
|---|---|
| PubMed | 21625436 23289852 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58200.1 |
| Rice Genome Annotation | LOC_Os04g58200.1 |
| Ricechip | LOC_Os04g58200.1 |
| KEGG | osa:4337415 dosa:Os04t0678700-01 |
| Entrez-Gene | 4337415 |