RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58280.1 View Network Show in Genome Browser |
| Other Names | Os04g0679400 |
| Description | stem-specific protein TSJT1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34694304-34697202 Nucleotide Length: 465 |
| Protein-coding | LOC_Os04g58280 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g20340 LOC_Os03g05270 LOC_Os04g44820 LOC_Os02g44630 LOC_Os01g07970 LOC_Os01g08310 LOC_Os01g42520 LOC_Os02g15690 LOC_Os03g55670 LOC_Os01g58550 LOC_Os04g43990 More.. |
| Downstream Genes | LOC_Os10g31850 LOC_Os06g51430 LOC_Os11g44810 LOC_Os06g05550 LOC_Os05g08420 LOC_Os06g50930 LOC_Os06g39370 LOC_Os05g01950 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58280.1 |
| Rice Genome Annotation | LOC_Os04g58280.1 |
| Ricechip | LOC_Os04g58280.1 |
| KEGG | osa:4337421 dosa:Os04t0679400-01 |
| Entrez-Gene | 4337421 |