RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58400.1 View Network Show in Genome Browser |
| Other Names | Os04g0680550 |
| Description | tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34743472-34749766 Nucleotide Length: 1125 |
| Protein-coding | LOC_Os04g58400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g31610 LOC_Os03g22740 LOC_Os03g22730 LOC_Os02g04100 LOC_Os03g09820 LOC_Os03g45410 LOC_Os03g10070 LOC_Os03g10340 LOC_Os01g39630 LOC_Os03g08280 LOC_Os02g18550 More.. |
| Downstream Genes | LOC_Os05g47480 LOC_Os12g39070 LOC_Os12g21798 LOC_Os08g01130 LOC_Os11g29190 LOC_Os08g01620 LOC_Os07g48300 LOC_Os09g36440 LOC_Os05g44390 LOC_Os10g29660 LOC_Os09g36710 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58400.1 |
| Rice Genome Annotation | LOC_Os04g58400.1 |
| Ricechip | LOC_Os04g58400.1 |
| KEGG | dosa:Os04t0680550-00 |