RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58410.1 View Network Show in Genome Browser |
| Other Names | Os04g0680700 |
| Description | smr domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34751498-34756062 Nucleotide Length: 2766 |
| Protein-coding | LOC_Os04g58410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g31150 LOC_Os01g54390 LOC_Os02g33500 |
| Downstream Genes | LOC_Os05g01750 LOC_Os10g26130 LOC_Os07g29410 LOC_Os11g13420 LOC_Os05g25400 LOC_Os05g48510 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6248 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58410.1 |
| Rice Genome Annotation | LOC_Os04g58410.1 |
| Ricechip | LOC_Os04g58410.1 |
| KEGG | osa:4337429 dosa:Os04t0680700-01 |
| Entrez-Gene | 4337429 |