RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58470.1 View Network Show in Genome Browser |
| Other Names | Os04g0681400 |
| Description | choline transporter-related, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34780497-34785126 Nucleotide Length: 2136 |
| Protein-coding | LOC_Os04g58470 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44840 LOC_Os01g70310 |
| Downstream Genes | LOC_Os07g46240 LOC_Os05g45930 LOC_Os06g20370 LOC_Os05g30750 LOC_Os07g26940 LOC_Os07g20150 LOC_Os09g39400 LOC_Os11g35320 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2275a osa-miR2275b |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58470.1 |
| Rice Genome Annotation | LOC_Os04g58470.1 |
| Ricechip | LOC_Os04g58470.1 |
| KEGG | osa:4337431 dosa:Os04t0681400-01 |
| Entrez-Gene | 4337431 |