RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58560.2 View Network Show in Genome Browser |
| Other Names | Os04g0682000 |
| Description | cysteine protease ATG4, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34816665-34820086 Nucleotide Length: 1374 |
| Protein-coding | LOC_Os04g58560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g53240 LOC_Os03g51600 LOC_Os03g45920 LOC_Os01g49190 LOC_Os01g16650 LOC_Os03g56810 LOC_Os01g59150 LOC_Os01g18050 LOC_Os02g07060 LOC_Os03g01530 LOC_Os01g36920 More.. |
| Downstream Genes | LOC_Os07g32800 LOC_Os08g09240 LOC_Os11g14220 LOC_Os07g10660 LOC_Os07g38730 LOC_Os05g34170 LOC_Os06g46000 LOC_Os07g49120 LOC_Os05g47980 LOC_Os06g14550 LOC_Os05g28750 More.. |
| Reference | |
|---|---|
| PubMed | 17082902 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58560.2 |
| Rice Genome Annotation | LOC_Os04g58560.2 |
| Ricechip | LOC_Os04g58560.2 |
| KEGG | osa:4337435 dosa:Os04t0682000-01 |
| Entrez-Gene | 4337435 |