RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g58580.1 View Network Show in Genome Browser
Other Names	Os04g0682300
Description	phosphomannomutase, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 34828250-34831282 Nucleotide Length: 747
Protein-coding	LOC_Os04g58580

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0005975	carbohydrate metabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g62350 LOC_Os03g49580 LOC_Os01g73310 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os02g52940 LOC_Os02g12800 LOC_Os02g58020 LOC_Os02g12794 LOC_Os03g61970 More..
Downstream Genes	LOC_Os05g38520 LOC_Os07g39870 LOC_Os12g03090 LOC_Os11g03400 LOC_Os05g23720 LOC_Os05g01600 LOC_Os12g03720 LOC_Os05g44310 LOC_Os08g09940 LOC_Os11g03900 LOC_Os06g37440 More..

miRNA Regulations
miRNAs	osa-miR2863b

Pathways
KEGG Pathways	rn00051 rn00520 rn01100 rn01110
Metacyc Pathways	PWY-882 MANGDPMET-PWY

Database Links
Gramene	LOC_Os04g58580.1
Rice Genome Annotation	LOC_Os04g58580.1
Ricechip	LOC_Os04g58580.1
KEGG	osa:4337437 dosa:Os04t0682300-01
Entrez-Gene	4337437