RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58580.2 View Network Show in Genome Browser |
| Other Names | Os04g0682300 |
| Description | phosphomannomutase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34828250-34831279 Nucleotide Length: 720 |
| Protein-coding | LOC_Os04g58580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g62350 LOC_Os03g49580 LOC_Os01g73310 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os02g52940 LOC_Os02g12800 LOC_Os02g58020 LOC_Os02g12794 LOC_Os03g61970 More.. |
| Downstream Genes | LOC_Os05g38520 LOC_Os07g39870 LOC_Os12g03090 LOC_Os11g03400 LOC_Os05g23720 LOC_Os05g01600 LOC_Os12g03720 LOC_Os05g44310 LOC_Os08g09940 LOC_Os11g03900 LOC_Os06g37440 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2863b |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58580.2 |
| Rice Genome Annotation | LOC_Os04g58580.2 |
| Ricechip | LOC_Os04g58580.2 |
| KEGG | osa:4337437 dosa:Os04t0682300-01 |
| Entrez-Gene | 4337437 |