RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58630.3 View Network Show in Genome Browser |
| Other Names | Os04g0682900 |
| Description | DNA mismatch repair protein MSH3, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34873439-34877172 Nucleotide Length: 1872 |
| Protein-coding | LOC_Os04g58630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g37920 LOC_Os01g72880 LOC_Os02g56130 LOC_Os02g53680 LOC_Os03g51990 LOC_Os03g14370 LOC_Os01g56940 LOC_Os04g32110 LOC_Os03g40100 LOC_Os02g34990 LOC_Os01g67510 More.. |
| Downstream Genes | LOC_Os05g19270 LOC_Os09g24220 LOC_Os10g37490 LOC_Os09g37930 LOC_Os07g30980 LOC_Os11g19720 LOC_Os12g05650 LOC_Os08g42100 LOC_Os05g01310 LOC_Os11g48090 LOC_Os08g42080 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58630.3 |
| Rice Genome Annotation | LOC_Os04g58630.3 |
| Ricechip | LOC_Os04g58630.3 |
| KEGG | osa:4337442 dosa:Os04t0682900-01 |
| Entrez-Gene | 4337442 |