RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58640.1 View Network Show in Genome Browser |
| Other Names | Os04g0683100 |
| Description | cleavage and polyadenylation specificity factor subunit 5, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34877801-34881638 Nucleotide Length: 609 |
| Protein-coding | LOC_Os04g58640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01250 LOC_Os02g14780 LOC_Os03g63590 LOC_Os03g17010 LOC_Os03g13760 LOC_Os01g72890 LOC_Os01g36570 LOC_Os02g12570 LOC_Os04g39444 LOC_Os01g51300 LOC_Os02g13990 More.. |
| Downstream Genes | LOC_Os10g02630 LOC_Os06g21470 LOC_Os10g31900 LOC_Os07g07220 LOC_Os08g04280 LOC_Os11g43620 LOC_Os10g06130 LOC_Os08g34480 LOC_Os09g20590 LOC_Os08g05530 LOC_Os10g34520 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58640.1 |
| Rice Genome Annotation | LOC_Os04g58640.1 |
| Ricechip | LOC_Os04g58640.1 |
| KEGG | osa:4337444 dosa:Os04t0683100-01 |
| Entrez-Gene | 4337444 |