RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58690.1 View Network Show in Genome Browser |
| Other Names | Os04g0683500 |
| Description | tRNA-specific adenosine deaminase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34892934-34895965 Nucleotide Length: 1281 |
| Protein-coding | LOC_Os04g58690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g56300 LOC_Os03g63520 LOC_Os03g20570 LOC_Os01g74000 LOC_Os03g11540 LOC_Os04g28090 LOC_Os03g43890 LOC_Os03g51550 LOC_Os01g16414 LOC_Os01g56630 LOC_Os01g21860 More.. |
| Downstream Genes | LOC_Os08g36490 LOC_Os08g06070 LOC_Os09g36440 LOC_Os10g28040 LOC_Os10g32710 LOC_Os07g32480 LOC_Os05g42300 LOC_Os05g06450 LOC_Os05g29010 LOC_Os10g32880 LOC_Os05g01360 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 |
| Metacyc Pathways | SALVADEHYPOX-PWY P121-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58690.1 |
| Rice Genome Annotation | LOC_Os04g58690.1 |
| Ricechip | LOC_Os04g58690.1 |
| KEGG | osa:4337445 dosa:Os04t0683500-01 |
| Entrez-Gene | 4337445 |