RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58720.1 View Network Show in Genome Browser |
| Other Names | Os04g0683800 |
| Description | anthranilate phosphoribosyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34915791-34920089 Nucleotide Length: 3036 |
| Protein-coding | LOC_Os04g58720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59120 LOC_Os02g51540 LOC_Os02g05620 LOC_Os03g52490 LOC_Os03g18010 LOC_Os02g10630 LOC_Os04g40070 LOC_Os04g38310 LOC_Os01g54870 LOC_Os01g71230 LOC_Os01g65460 More.. |
| Downstream Genes | LOC_Os07g49330 LOC_Os06g19400 LOC_Os06g40570 LOC_Os12g37560 LOC_Os08g38440 LOC_Os05g03610 LOC_Os06g20370 LOC_Os10g03540 LOC_Os06g04800 LOC_Os11g08330 LOC_Os06g44370 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR167a-3p osa-miR172a osa-miR172d-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn01100 rn01120 |
| Metacyc Pathways | PWY-702 HOMOSER-THRESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58720.1 |
| Rice Genome Annotation | LOC_Os04g58720.1 |
| Ricechip | LOC_Os04g58720.1 |
| KEGG | osa:4337448 dosa:Os04t0683800-01 |
| Entrez-Gene | 4337448 |