RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58800.1 View Network Show in Genome Browser |
| Other Names | Os04g0684800 |
| Description | ubiquitin-conjugating enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34975646-34977779 Nucleotide Length: 447 |
| Protein-coding | LOC_Os04g58800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48280 LOC_Os01g70140 LOC_Os02g56130 LOC_Os04g02820 LOC_Os03g47770 LOC_Os03g03130 LOC_Os01g03520 LOC_Os02g32030 LOC_Os04g56070 LOC_Os01g46926 LOC_Os02g02560 More.. |
| Downstream Genes | LOC_Os06g09330 LOC_Os10g11260 LOC_Os09g15320 LOC_Os08g28680 LOC_Os12g36194 LOC_Os09g38030 LOC_Os11g32900 LOC_Os12g44000 LOC_Os10g31000 LOC_Os10g39120 LOC_Os06g30970 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58800.1 |
| Rice Genome Annotation | LOC_Os04g58800.1 |
| Ricechip | LOC_Os04g58800.1 |
| KEGG | osa:4337456 dosa:Os04t0684800-01 |
| Entrez-Gene | 4337456 |