RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58840.1 View Network Show in Genome Browser |
| Other Names | Os04g0685200 |
| Description | Eukaryotic aspartyl protease domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34997071-34999168 Nucleotide Length: 1473 |
| Protein-coding | LOC_Os04g58840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g55930 LOC_Os03g50810 LOC_Os04g57800 LOC_Os02g15690 LOC_Os03g36540 LOC_Os02g53200 LOC_Os02g42380 LOC_Os03g08790 LOC_Os04g44440 LOC_Os01g48990 LOC_Os02g30380 More.. |
| Downstream Genes | LOC_Os08g35090 LOC_Os08g39550 LOC_Os08g25900 LOC_Os10g25780 LOC_Os05g47850 LOC_Os06g16330 LOC_Os06g01490 LOC_Os09g26190 LOC_Os10g41310 LOC_Os05g20930 LOC_Os08g12410 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58840.1 |
| Rice Genome Annotation | LOC_Os04g58840.1 |
| Ricechip | LOC_Os04g58840.1 |
| KEGG | osa:4337460 dosa:Os04t0685200-01 |
| Entrez-Gene | 4337460 |