RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58850.1 View Network Show in Genome Browser |
| Other Names | Os04g0685300 |
| Description | harpin-induced protein 1 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 35000969-35002146 Nucleotide Length: 618 |
| Protein-coding | LOC_Os04g58850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g15630 LOC_Os02g16030 LOC_Os01g68090 LOC_Os01g53470 LOC_Os02g08440 LOC_Os02g15810 LOC_Os01g70790 LOC_Os04g48850 LOC_Os01g46800 |
| Downstream Genes | LOC_Os09g25760 LOC_Os12g02700 LOC_Os11g02730 LOC_Os08g44410 LOC_Os08g38580 LOC_Os06g49650 LOC_Os08g37370 LOC_Os05g39930 LOC_Os06g44010 LOC_Os05g31620 LOC_Os05g51130 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58850.1 |
| Rice Genome Annotation | LOC_Os04g58850.1 |
| Ricechip | LOC_Os04g58850.1 |
| KEGG | osa:4337461 dosa:Os04t0685300-02 |
| Entrez-Gene | 4337461 |