RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58870.3 View Network Show in Genome Browser |
| Other Names | Os04g0685500 |
| Description | exo70 exocyst complex subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 35016589-35020137 Nucleotide Length: 1347 |
| Protein-coding | LOC_Os04g58870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g58860 LOC_Os03g52630 LOC_Os01g25560 LOC_Os03g14170 LOC_Os01g54940 LOC_Os03g03164 LOC_Os01g11710 LOC_Os04g48230 LOC_Os01g71280 LOC_Os04g40730 LOC_Os01g71474 More.. |
| Downstream Genes | LOC_Os11g30360 LOC_Os10g32880 LOC_Os06g06250 LOC_Os12g38360 LOC_Os11g26190 LOC_Os08g32160 LOC_Os09g25850 LOC_Os10g42620 LOC_Os12g34524 LOC_Os07g01370 LOC_Os12g37650 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58870.3 |
| Rice Genome Annotation | LOC_Os04g58870.3 |
| Ricechip | LOC_Os04g58870.3 |
| KEGG | osa:9268636 dosa:Os04t0685500-02 |
| Entrez-Gene | 9268636 |