RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g58960.1 View Network Show in Genome Browser |
| Other Names | Os04g0686200 |
| Description | regulator of chromosome condensation, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 35067281-35074912 Nucleotide Length: 3174 |
| Protein-coding | LOC_Os04g58960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003682 | chromatin binding | Molecular Function | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g46710 LOC_Os03g63470 LOC_Os03g43670 LOC_Os04g38570 |
| Downstream Genes | LOC_Os08g34950 LOC_Os10g42230 LOC_Os11g11490 LOC_Os05g03620 LOC_Os09g39020 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444a-3p.1 osa-miR444d.1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g58960.1 |
| Rice Genome Annotation | LOC_Os04g58960.1 |
| Ricechip | LOC_Os04g58960.1 |
| KEGG | osa:4337469 dosa:Os04t0686200-01 |
| Entrez-Gene | 4337469 |