RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g59494.4 View Network Show in Genome Browser |
| Other Names | Os04g0691500 |
| Description | transportin-2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 35369083-35381254 Nucleotide Length: 2676 |
| Protein-coding | LOC_Os04g59494 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g38000 LOC_Os01g42980 LOC_Os02g30050 LOC_Os03g03360 LOC_Os01g15290 LOC_Os01g10820 LOC_Os02g14059 LOC_Os03g48840 LOC_Os02g51790 LOC_Os03g61260 LOC_Os03g04590 More.. |
| Downstream Genes | LOC_Os09g08430 LOC_Os07g41750 LOC_Os08g41810 LOC_Os12g42180 LOC_Os06g46930 LOC_Os09g19954 LOC_Os12g04160 LOC_Os11g04370 LOC_Os06g35730 LOC_Os05g11710 LOC_Os07g23244 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g59494.4 |
| Rice Genome Annotation | LOC_Os04g59494.4 |
| Ricechip | LOC_Os04g59494.4 |
| KEGG | osa:4337505 dosa:Os04t0691500-01 |
| Entrez-Gene | 4337505 |