RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g59540.1 View Network Show in Genome Browser |
| Other Names | Os04g0691900 |
| Description | phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 35413243-35418842 Nucleotide Length: 4146 |
| Protein-coding | LOC_Os04g59540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g46620 LOC_Os03g59020 LOC_Os02g22780 LOC_Os03g04970 LOC_Os03g12300 LOC_Os03g24170 |
| Downstream Genes | LOC_Os10g32550 LOC_Os05g05470 LOC_Os10g37060 LOC_Os05g46290 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR166i-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g59540.1 |
| Rice Genome Annotation | LOC_Os04g59540.1 |
| Ricechip | LOC_Os04g59540.1 |
| KEGG | osa:4337509 dosa:Os04t0691900-01 |
| Entrez-Gene | 4337509 |