RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g59600.1 View Network Show in Genome Browser |
| Other Names | Os04g0692500 |
| Description | pentatricopeptide, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 35439339-35442698 Nucleotide Length: 1140 |
| Protein-coding | LOC_Os04g59600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g57220 LOC_Os04g25550 LOC_Os02g14929 LOC_Os04g30890 LOC_Os01g14610 LOC_Os03g14860 |
| Downstream Genes | LOC_Os06g20390 LOC_Os08g09210 LOC_Os07g37740 LOC_Os06g21470 LOC_Os05g42330 LOC_Os09g38790 LOC_Os06g34690 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g59600.1 |
| Rice Genome Annotation | LOC_Os04g59600.1 |
| Ricechip | LOC_Os04g59600.1 |
| KEGG | osa:9266673 dosa:Os04t0692500-01 |
| Entrez-Gene | 9266673 |