RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g01450.1 View Network Show in Genome Browser |
| Other Names | Os05g0104800 |
| Description | eukaryotic translation initiation factor 3 subunit F, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 259953-262291 Nucleotide Length: 855 |
| Protein-coding | LOC_Os05g01450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g60790 LOC_Os04g30780 LOC_Os03g58430 LOC_Os04g39700 LOC_Os01g16190 LOC_Os04g51630 LOC_Os03g40180 LOC_Os03g05980 LOC_Os02g01560 LOC_Os03g08440 LOC_Os04g56070 More.. |
| Downstream Genes | LOC_Os07g08660 LOC_Os05g46490 LOC_Os05g39960 LOC_Os05g30800 LOC_Os07g42950 LOC_Os07g10660 LOC_Os09g32520 LOC_Os08g06040 LOC_Os09g32976 LOC_Os08g23710 LOC_Os11g38959 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g01450.1 |
| Rice Genome Annotation | LOC_Os05g01450.1 |
| Ricechip | LOC_Os05g01450.1 |
| KEGG | osa:4337552 dosa:Os05t0104800-01 |
| Entrez-Gene | 4337552 |