RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g01540.2 View Network Show in Genome Browser |
| Other Names | Os05g0105900 |
| Description | serine/arginine repetitive matrix protein 1, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 316949-320774 Nucleotide Length: 1278 |
| Protein-coding | LOC_Os05g01540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g17010 LOC_Os02g01740 LOC_Os04g41100 LOC_Os02g39010 LOC_Os03g53220 LOC_Os03g49520 LOC_Os04g58640 LOC_Os03g63590 LOC_Os02g13990 LOC_Os02g14780 LOC_Os01g73880 More.. |
| Downstream Genes | LOC_Os07g07220 LOC_Os06g40600 LOC_Os11g07500 LOC_Os08g37960 LOC_Os05g48960 LOC_Os07g47630 LOC_Os07g32430 LOC_Os10g31900 LOC_Os05g30410 LOC_Os07g36940 LOC_Os05g07050 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g01540.2 |
| Rice Genome Annotation | LOC_Os05g01540.2 |
| Ricechip | LOC_Os05g01540.2 |
| KEGG | osa:4337561 dosa:Os05t0105900-01 |
| Entrez-Gene | 4337561 |