RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g01710.3 View Network Show in Genome Browser |
| Other Names | Os05g0107700 |
| Description | transcription initiation factor IIA gamma chain, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 437013-443270 Nucleotide Length: 321 |
| Protein-coding | LOC_Os05g01710 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g45410 LOC_Os01g23630 LOC_Os01g54550 LOC_Os01g34614 LOC_Os03g38960 LOC_Os01g63940 LOC_Os03g29470 LOC_Os02g02510 LOC_Os03g06630 LOC_Os01g32750 LOC_Os01g59140 More.. |
| Downstream Genes | LOC_Os05g22670 LOC_Os12g39070 LOC_Os10g28340 LOC_Os07g22950 LOC_Os09g36440 LOC_Os06g44030 LOC_Os07g07610 LOC_Os10g29660 LOC_Os06g48230 LOC_Os11g08940 LOC_Os05g32600 More.. |
| Reference | |
|---|---|
| PubMed | 18944079 12677405 15597740 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g01710.3 |
| Rice Genome Annotation | LOC_Os05g01710.3 |
| Ricechip | LOC_Os05g01710.3 |
| KEGG | osa:4337575 dosa:Os05t0107700-01 |
| Entrez-Gene | 4337575 |