RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g02040.1 View Network Show in Genome Browser |
| Other Names | Os05g0111000 |
| Description | RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 593356-598068 Nucleotide Length: 2856 |
| Protein-coding | LOC_Os05g02040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g42230 LOC_Os04g49860 LOC_Os02g58220 LOC_Os02g46130 LOC_Os03g38980 LOC_Os03g25130 LOC_Os01g06020 LOC_Os02g04700 LOC_Os02g56130 LOC_Os03g08640 LOC_Os02g35100 More.. |
| Downstream Genes | LOC_Os05g19270 LOC_Os07g37720 LOC_Os07g30200 LOC_Os05g46270 LOC_Os09g24220 LOC_Os06g47830 LOC_Os07g37710 LOC_Os11g29380 LOC_Os11g40150 LOC_Os05g06840 LOC_Os12g37400 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g02040.1 |
| Rice Genome Annotation | LOC_Os05g02040.1 |
| Ricechip | LOC_Os05g02040.1 |
| KEGG | osa:4337594 dosa:Os05t0111000-01 |
| Entrez-Gene | 4337594 |