RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g02140.1 View Network Show in Genome Browser |
| Other Names | Os05g0112101 |
| Description | clathrin assembly protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 648654-650677 Nucleotide Length: 1746 |
| Protein-coding | LOC_Os05g02140 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g45010 LOC_Os03g15940 LOC_Os04g52140 LOC_Os02g42820 LOC_Os02g56270 LOC_Os02g58730 LOC_Os02g20850 LOC_Os02g02840 LOC_Os02g50860 LOC_Os02g14840 LOC_Os01g55200 More.. |
| Downstream Genes | LOC_Os08g45230 LOC_Os10g35930 LOC_Os10g23090 LOC_Os06g12790 LOC_Os09g26160 LOC_Os06g08900 LOC_Os05g43820 LOC_Os09g39320 LOC_Os06g12590 LOC_Os10g29540 LOC_Os06g04450 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g02140.1 |
| Rice Genome Annotation | LOC_Os05g02140.1 |
| Ricechip | LOC_Os05g02140.1 |
| KEGG | osa:9270026 dosa:Os05t0112101-01 |
| Entrez-Gene | 9270026 |