RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g02940.1 View Network Show in Genome Browser |
| Other Names | Os05g0120700 |
| Description | calcium-transporting ATPase 2, endoplasmic reticulum-type, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1083905-1086167 Nucleotide Length: 1122 |
| Protein-coding | LOC_Os05g02940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g51610 LOC_Os02g08010 LOC_Os03g27960 LOC_Os03g06200 |
| Downstream Genes | LOC_Os08g44770 LOC_Os05g33390 LOC_Os05g25850 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g02940.1 |
| Rice Genome Annotation | LOC_Os05g02940.1 |
| Ricechip | LOC_Os05g02940.1 |
| KEGG | osa:4337647 dosa:Os05t0120700-01 |
| Entrez-Gene | 4337647 |