RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g03020.1 View Network Show in Genome Browser |
| Other Names | Os05g0121400 |
| Description | ZOS5-03 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1142027-1145752 Nucleotide Length: 1143 |
| Protein-coding | LOC_Os05g03020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g38960 LOC_Os01g63710 LOC_Os04g48520 LOC_Os04g46450 LOC_Os03g50850 LOC_Os03g61640 LOC_Os03g37330 LOC_Os02g06890 LOC_Os04g42990 LOC_Os03g43900 LOC_Os03g42770 More.. |
| Downstream Genes | LOC_Os07g27930 LOC_Os06g47840 LOC_Os08g45040 LOC_Os12g31840 LOC_Os08g32990 |
| Pathways | |
|---|---|
| Metacyc Pathways | ANAEROFRUCAT-PWY PWY-1042 PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g03020.1 |
| Rice Genome Annotation | LOC_Os05g03020.1 |
| Ricechip | LOC_Os05g03020.1 |
| KEGG | osa:4337652 dosa:Os05t0121400-02 |
| Entrez-Gene | 4337652 |