RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g03610.1 View Network Show in Genome Browser |
| Other Names | Os05g0127200 |
| Description | phospholipase C, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1535708-1541571 Nucleotide Length: 1797 |
| Protein-coding | LOC_Os05g03610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g20370 LOC_Os01g16240 LOC_Os02g10740 LOC_Os01g17190 LOC_Os03g59590 LOC_Os02g31030 LOC_Os01g59530 LOC_Os01g62570 LOC_Os02g42134 LOC_Os03g48140 LOC_Os04g58720 More.. |
| Downstream Genes | LOC_Os07g48780 LOC_Os05g41210 LOC_Os06g40200 LOC_Os10g25010 LOC_Os08g42530 LOC_Os07g30020 LOC_Os06g41090 LOC_Os09g33600 LOC_Os07g14340 LOC_Os12g03816 LOC_Os05g30750 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e |
| Pathways | |
|---|---|
| KEGG Pathways | rn00562 rn01100 |
| Metacyc Pathways | LIPASYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g03610.1 |
| Rice Genome Annotation | LOC_Os05g03610.1 |
| Ricechip | LOC_Os05g03610.1 |
| KEGG | osa:4337686 dosa:Os05t0127200-01 |
| Entrez-Gene | 4337686 |