RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g03740.1 View Network Show in Genome Browser |
| Other Names | Os05g0128000 |
| Description | transcription factor TF2, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1643448-1644746 Nucleotide Length: 1002 |
| Protein-coding | LOC_Os05g03740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g51320 LOC_Os02g02710 LOC_Os02g21880 LOC_Os04g50990 LOC_Os02g47140 LOC_Os02g48660 |
| Downstream Genes | LOC_Os06g05240 LOC_Os11g11390 LOC_Os09g13680 LOC_Os06g40960 LOC_Os08g39500 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1846a-3p osa-miR1846b-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g03740.1 |
| Rice Genome Annotation | LOC_Os05g03740.1 |
| Ricechip | LOC_Os05g03740.1 |
| KEGG | osa:4337690 dosa:Os05t0128000-00 |
| Entrez-Gene | 4337690 |